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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ATAC-seq
28
ChIP-seq
2
Hi-C
Assay category
34
DNA accessibility
28
DNA binding
2
3D chromatin structure
Target of assay
22
histone
22
histone modification
16
broad histone mark
6
narrow histone mark
5
control
1
RNA binding protein
1
transcription factor
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
74
bam
49
bed narrowPeak
45
bigWig
tsv
17
fastq
14
tagAlign
6
bigBed narrowPeak
4
bed broadPeak
2
bedpe bed3+
2
hic
Organism
64
Homo sapiens
Biosample type
44
tissue
15
cell line
5
in vitro differentiated cells
Organ
40
pancreas
16
brain
15
epithelium
2
adipose tissue
2
connective tissue
1
spleen
Project
64
AMP
Genome assembly (visualization)
52
hg19
51
GRCh38
Lab
63
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
21
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
64 results
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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
20
1
brain
15
body of pancreas
4
adipose tissue(adipose white tissue)
1
cerebellum (Hemisphere)
1
+ See 2 more…
cell line
EndoC_BH1
1
13
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
See all biosamples
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