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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
32
pCHi-C
12
Hi-C
2
ATAC-seq
Assay category
33
Transcription
12
3D chromatin structure
2
DNA accessibility
Date released
559
February, 2021
189
May, 2020
173
May, 2021
164
July, 2018
125
August, 2021
89
August, 2017
65
July, 2019
57
March, 2020
49
April, 2018
26
September, 2018
25
February, 2020
22
November, 2019
19
October, 2019
16
February, 2023
15
February, 2018
9
December, 2019
5
January, 2019
4
August, 2018
4
November, 2020
3
June, 2018
3
October, 2022
2
October, 2018
Available data
75
bam
65
tsv
51
bigWig
40
bed narrowPeak
14
bedpe bed3+
12
hic
2
ibed
Organism
79
Homo sapiens
Biosample type
55
tissue
11
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
29
pancreas
7
heart
6
epithelium
5
musculature of body
4
blood vessel
4
vasculature
3
liver
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
77
AMP
2
T1D
Genome assembly (visualization)
49
hg19
33
GRCh38
Lab
79
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
BIOSAMPLE
ASSAY
79 results
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total RNA-seq
pCHi-C
Hi-C
ATAC-seq
tissue
islet of Langerhans
19
1
1
psoas muscle
2
1
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
cell line
EndoC_BH1
3
1
1
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
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