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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
single cell RNA-seq
26
total RNA-seq
21
ATAC-seq
13
ChIP-seq
2
Hi-C
Assay category
69
Transcription
21
DNA accessibility
13
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
103
bam
80
bigWig
69
tsv
44
fastq
32
bed narrowPeak
2
bedpe bed3+
2
hic
Organism
105
Homo sapiens
Biosample type
46
tissue
43
primary cell
16
cell line
in vitro differentiated cells
Organ
94
pancreas
49
epithelium
3
connective tissue
1
adipose tissue
Project
105
AMP
Genome assembly (visualization)
103
hg19
101
GRCh38
Lab
105
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
105 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
25
19
1
adipose tissue(adipose white tissue)
1
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 5 more…
cell line
EndoC_BH1
1
1
13
1
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