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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
13
ATAC-seq
1
Hi-C
1
total RNA-seq
Assay category
59
DNA binding
13
DNA accessibility
1
3D chromatin structure
1
Transcription
Target of assay
36
histone
36
histone modification
18
broad histone mark
18
narrow histone mark
12
transcription factor
11
control
3
RNA binding protein
1
chromatin remodeller
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
66
bam
55
bigWig
53
bed narrowPeak
53
fastq
15
bed bed3+
14
bigBed narrowPeak
1
bedpe bed3+
1
hic
1
tsv
Organism
74
Homo sapiens
Biosample type
tissue
48
in vitro differentiated cells
16
cell line
7
primary cell
3
stem cell
Organ
42
epithelium
23
pancreas
15
liver
13
embryo
Project
67
AMP
7
HPAP
Genome assembly (visualization)
66
GRCh38
60
hg19
Lab
67
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
25
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
biosample_type!
tissue
BIOSAMPLE
ASSAY
74 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Posterior foregut
5
definitive endodermal cell
5
+ See 2 more…
cell line
EndoC_BH1
13
1
1
1
primary cell
pancreatic alpha cell
5
pancreatic beta cell
2
stem cell
hESC
3
See all biosamples
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