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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
26
ATAC-seq
20
total RNA-seq
16
snATAC-seq
3
Hi-C
Assay category
47
DNA binding
42
DNA accessibility
20
Transcription
3
3D chromatin structure
Target of assay
29
transcription factor
10
histone
10
histone modification
6
broad histone mark
6
control
4
narrow histone mark
3
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
93
bam
67
bed narrowPeak
61
bigWig
35
fastq
30
bigBed narrowPeak
20
tsv
2
bedpe bed3+
2
hic
Organism
112
Homo sapiens
Biosample type
55
tissue
44
cell line
8
primary cell
5
in vitro differentiated cells
Organ
63
pancreas
35
blood
35
bodily fluid
16
epithelium
7
spleen
1
adipose tissue
1
connective tissue
1
liver
Project
96
AMP
16
T1D
Genome assembly (visualization)
89
hg19
87
GRCh38
Lab
96
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
112 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
Hi-C
tissue
islet of Langerhans
19
19
4
1
spleen
7
pancreas
4
adipose tissue(adipose white tissue)
1
cell line
GM12878
27
EndoC_BH1
13
1
1
1
HepG2
1
primary cell
peripheral blood mononuclear cell
8
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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