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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ATAC-seq
51
total RNA-seq
41
WGBS
35
single cell RNA-seq
22
snATAC-seq
13
ChIP-seq
2
Hi-C
2
RNA microarray
Assay category
120
DNA accessibility
86
Transcription
41
DNA methylation
13
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
83
bam
70
bed narrowPeak
56
bigWig
27
tsv
24
fastq
7
txt
2
bedpe bed3+
2
hic
1
bed bed3+
Organism
264
Homo sapiens
Biosample type
139
primary cell
109
tissue
16
cell line
in vitro differentiated cells
Organ
159
pancreas
102
epithelium
45
liver
3
kidney
2
musculature of body
1
adipose tissue
1
connective tissue
Project
134
HPAP
130
AMP
Genome assembly (visualization)
98
hg19
57
GRCh38
Lab
134
Klaus Kaestner, Upenn
66
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
3
audit script error
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
264 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
ChIP-seq
Hi-C
RNA microarray
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
hepatocyte
5
pancreatic acinar cell
4
tissue
islet of Langerhans
37
25
1
liver
20
20
skeletal muscle tissue
1
1
adipose tissue(adipose white tissue)
1
kidney
1
+ See 2 more…
cell line
EndoC_BH1
1
1
13
1
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