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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
24
ChIP-seq
19
ATAC-seq
1
Hi-C
Assay category
34
Transcription
24
DNA binding
19
DNA accessibility
1
3D chromatin structure
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
control
8
narrow histone mark
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
77
bam
50
bigWig
39
fastq
35
bed narrowPeak
34
tsv
1
bedpe bed3+
1
hic
Organism
78
Homo sapiens
Biosample type
39
in vitro differentiated cells
39
tissue
Organ
39
pancreas
13
embryo
Project
78
AMP
Genome assembly (visualization)
70
hg19
69
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
2
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
78 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
in vitro differentiated cells
pancreatic endoderm
4
9
definitive endodermal cell
2
3
embryonic stem cell
2
3
endocrine cell
2
3
posterior foregut
2
3
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tissue
islet of Langerhans
19
19
1
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