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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
565
total RNA-seq
84
RNA microarray
48
ATAC-seq
21
ChIP-seq
6
single cell RNA-seq
3
snDrop-seq
2
Hi-C
2
pCHi-C
Assay category
571
Transcription
48
DNA accessibility
21
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
6
transcription factor
5
control
4
narrow histone mark
1
RNA binding protein
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
631
bam
582
bigWig
573
tsv
89
txt
60
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
bedpe bed3+
2
hic
Organism
731
Homo sapiens
Biosample type
585
tissue
112
cell line
31
in vitro differentiated cells
3
primary cell
Organ
456
connective tissue
387
adipose tissue
150
bone element
81
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
42
epithelium
8
kidney
8
skeleton
6
limb
3
liver
Project
731
AMP
Genome assembly (visualization)
633
hg19
625
GRCh38
Lab
731
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
150
inconsistent ontology term
5
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
731 results
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total RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
single cell RNA-seq
snDrop-seq
Hi-C
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
islet of Langerhans
19
19
1
kidney
5
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cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
27
1
13
1
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
osteoblast
1
1
1
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