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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
210
total RNA-seq
130
ATAC-seq
63
ChIP-seq
3
Hi-C
1
pCHi-C
Assay category
210
Transcription
130
DNA accessibility
63
DNA binding
3
3D chromatin structure
Target of assay
37
histone
37
histone modification
31
narrow histone mark
25
control
6
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
343
bam
291
bigWig
209
tsv
64
bed narrowPeak
50
tagAlign
3
hic
2
bedpe bed3+
1
bed broadPeak
1
bedpe
1
fastq
Organism
407
Homo sapiens
Biosample type
238
tissue
147
primary cell
17
cell line
5
in vitro differentiated cells
Organ
194
liver
60
pancreas
16
epithelium
1
adipose tissue
1
connective tissue
Project
362
AMP
45
T1D
Genome assembly (visualization)
322
hg19
266
GRCh38
Lab
357
AMP-T2D consortium
45
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
30
inconsistent ontology term
BIOSAMPLE
ASSAY
407 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
tissue
liver
143
50
islet of Langerhans
19
23
2
adipose tissue(adipose white tissue)
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
EndoC_BH1
1
1
13
1
HepG2
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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