Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ATAC-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
20
total RNA-seq
2
Hi-C
Assay category
81
DNA accessibility
54
Transcription
41
DNA methylation
2
3D chromatin structure
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
134
zippedFastqFolder
bam
75
bed narrowPeak
51
bigWig
24
fastq
20
tsv
7
txt
2
bedpe bed3+
2
hic
1
bed bed3+
Organism
178
Homo sapiens
Biosample type
134
primary cell
43
tissue
1
cell line
Organ
82
pancreas
81
epithelium
40
liver
2
musculature of body
Project
134
HPAP
44
AMP
Genome assembly (visualization)
23
hg19
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
4
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
178 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
total RNA-seq
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
skeletal muscle tissue
1
1
islet of Langerhans
1
cell line
EndoC_BH1
1
Download