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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
333
ChIP-seq
6
ATAC-seq
1
Hi-C
1
total RNA-seq
Assay category
333
DNA binding
6
DNA accessibility
1
3D chromatin structure
1
Transcription
Target of assay
241
transcription factor
66
recombinant protein
61
control
36
RNA binding protein
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
11
chromatin remodeller
2
other context
2
other post-translational modification
Date released
359
May, 2021
320
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
126
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
59
September, 2020
58
November, 2018
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
339
bam
320
fastq
285
bigWig
268
bed narrowPeak
251
bigBed narrowPeak
64
bed broadPeak
64
bigBed broadPeak
12
tagAlign
3
tar
1
bedpe bed3+
1
hic
1
tsv
Organism
341
Homo sapiens
Biosample type
327
cell line
tissue
9
primary cell
5
in vitro differentiated cells
Organ
311
liver
22
epithelium
16
pancreas
9
brain
6
vasculature
3
blood vessel
Project
341
AMP
Genome assembly (visualization)
290
hg19
239
GRCh38
Lab
341
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
21
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
341 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
cell line
HepG2
311
EndoC_BH1
13
1
1
1
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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