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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
345
ChIP-seq
20
total RNA-seq
Assay category
345
DNA binding
20
Transcription
Target of assay
241
transcription factor
85
histone
85
histone modification
66
recombinant protein
51
broad histone mark
36
RNA binding protein
34
narrow histone mark
16
control
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
451
bam
365
bigWig
350
bed narrowPeak
324
fastq
312
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
20
tsv
3
tar
2
bedpe bed3+
2
hic
Organism
365
Homo sapiens
Biosample type
280
cell line
76
tissue
9
primary cell
Organ
268
liver
66
brain
31
pancreas
18
epithelium
6
vasculature
3
blood vessel
Project
365
AMP
Genome assembly (visualization)
312
hg19
310
GRCh38
Lab
365
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
September, 2018
BIOSAMPLE
ASSAY
365 results
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Clear Filters
ChIP-seq
total RNA-seq
cell line
HepG2
268
EndoC_BH1
11
1
tissue
islet of Langerhans
19
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
substantia nigra
11
+ See 2 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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