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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
27
ATAC-seq
24
total RNA-seq
10
DNase-seq
10
MeRIP-seq
7
WGBS
2
Hi-C
1
FAIRE-seq
1
single cell RNA-seq
Assay category
83
DNA binding
38
DNA accessibility
25
Transcription
7
DNA methylation
2
3D chromatin structure
Target of assay
65
transcription factor
22
RNA binding protein
16
recombinant protein
13
control
10
histone
10
histone modification
7
chromatin remodeller
6
broad histone mark
5
nucleotide modification
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
152
bam
116
bigWig
112
bed narrowPeak
88
fastq
74
bigBed narrowPeak
24
tsv
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
Organism
165
Homo sapiens
Biosample type
83
cell line
70
tissue
7
primary cell
5
in vitro differentiated cells
Organ
72
pancreas
53
liver
22
epithelium
15
blood
15
bodily fluid
9
spleen
8
connective tissue
2
adipose tissue
2
brain
Project
165
AMP
Genome assembly (visualization)
142
GRCh38
136
hg19
Lab
155
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
165 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
MeRIP-seq
WGBS
Hi-C
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
EndoC_BH1
13
1
1
6
1
GM12878
15
tissue
islet of Langerhans
19
19
4
1
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 4 more…
primary cell
osteoblast
1
4
1
pancreatic cell
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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