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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
5
total RNA-seq
2
DNase-seq
2
Hi-C
1
ATAC-seq
Assay category
36
DNA binding
5
Transcription
3
DNA accessibility
2
3D chromatin structure
Target of assay
17
histone
17
histone modification
11
control
10
broad histone mark
8
transcription factor
7
narrow histone mark
7
recombinant protein
1
RNA binding protein
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
44
bam
32
bigWig
27
bed narrowPeak
8
bigBed narrowPeak
5
tsv
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
46
Homo sapiens
Biosample type
282
tissue
46
cell line
34
primary cell
13
in vitro differentiated cells
Organ
31
pancreas
18
epithelium
15
kidney
Project
46
AMP
Genome assembly (visualization)
34
hg19
33
GRCh38
Lab
46
AMP-T2D consortium
Audit category:
29
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
ATAC-seq
cell line
EndoC_BH1
13
1
1
1
Panc1
13
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
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