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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
328
ChIP-seq
1
ATAC-seq
1
Hi-C
1
total RNA-seq
Assay category
328
DNA binding
1
3D chromatin structure
1
DNA accessibility
1
Transcription
Target of assay
242
transcription factor
66
recombinant protein
58
control
35
RNA binding protein
25
histone
25
histone modification
15
chromatin remodeller
14
broad histone mark
11
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
329
bam
315
fastq
280
bigWig
261
bed narrowPeak
249
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
3
tar
1
bedpe bed3+
1
hic
1
tsv
Organism
331
Homo sapiens
Biosample type
331
cell line
121
tissue
9
primary cell
5
in vitro differentiated cells
Organ
315
liver
16
epithelium
16
pancreas
Project
331
AMP
Genome assembly (visualization)
280
hg19
230
GRCh38
Lab
331
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
331 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
cell line
HepG2
315
EndoC_BH1
13
1
1
1
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