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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
ChIP-seq
24
ATAC-seq
19
total RNA-seq
1
Hi-C
Assay category
400
DNA binding
24
DNA accessibility
19
Transcription
1
3D chromatin structure
Target of assay
242
transcription factor
86
histone
86
histone modification
69
control
66
recombinant protein
50
broad histone mark
36
narrow histone mark
35
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
400
November, 2017
373
May, 2021
341
May, 2020
325
August, 2017
312
August, 2021
297
February, 2021
278
October, 2019
197
June, 2019
152
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
87
November, 2018
83
July, 2019
80
April, 2019
75
December, 2017
57
March, 2020
51
October, 2018
47
September, 2023
44
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
14
May, 2023
12
September, 2018
10
November, 2020
7
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2022
1
October, 2022
Available data
429
bam
347
bigWig
333
bed narrowPeak
318
fastq
308
bigBed narrowPeak
78
tagAlign
66
bed broadPeak
60
bigBed broadPeak
19
tsv
3
tar
1
bedpe bed3+
1
hic
Organism
444
Homo sapiens
Biosample type
315
cell line
121
tissue
5
in vitro differentiated cells
3
primary cell
Organ
315
liver
91
brain
55
pancreas
epithelium
6
vasculature
3
blood vessel
adipose tissue
1
connective tissue
Project
444
AMP
Genome assembly (visualization)
319
GRCh38
319
hg19
Lab
444
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
adipose tissue
epithelium
BIOSAMPLE
ASSAY
444 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
cell line
HepG2
315
tissue
islet of Langerhans
19
19
1
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 2 more…
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
astrocyte of the cerebellum
3
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