Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
25
ATAC-seq
20
total RNA-seq
8
DNase-seq
7
WGBS
2
Hi-C
1
FAIRE-seq
1
single cell RNA-seq
Assay category
83
DNA binding
34
DNA accessibility
21
Transcription
7
DNA methylation
2
3D chromatin structure
Target of assay
65
transcription factor
22
RNA binding protein
16
recombinant protein
10
histone
10
histone modification
8
control
7
chromatin remodeller
6
broad histone mark
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
313
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
144
bam
110
bigWig
108
bed narrowPeak
87
fastq
72
bigBed narrowPeak
20
tsv
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
Organism
147
Homo sapiens
Biosample type
77
cell line
64
tissue
5
in vitro differentiated cells
1
primary cell
Organ
62
pancreas
53
liver
16
epithelium
15
blood
15
bodily fluid
9
spleen
adipose tissue
2
brain
2
connective tissue
Project
147
AMP
Genome assembly (visualization)
134
GRCh38
128
hg19
Lab
147
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
147 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
EndoC_BH1
13
1
1
1
GM12878
15
tissue
islet of Langerhans
19
19
1
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 2 more…
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic cell
1
See all biosamples
Download