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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
25
ATAC-seq
20
total RNA-seq
6
WGBS
5
DNase-seq
2
Hi-C
1
FAIRE-seq
1
single cell RNA-seq
Assay category
34
DNA binding
31
DNA accessibility
21
Transcription
6
DNA methylation
2
3D chromatin structure
Target of assay
16
transcription factor
10
histone
10
histone modification
8
control
6
broad histone mark
4
narrow histone mark
3
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
399
May, 2021
326
February, 2021
306
October, 2019
300
August, 2017
283
August, 2021
215
June, 2019
204
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
91
November, 2017
86
July, 2019
80
April, 2019
73
September, 2018
60
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
34
November, 2018
31
December, 2017
25
January, 2019
22
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
7
August, 2020
7
January, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
91
bam
58
bigWig
57
bed narrowPeak
34
fastq
21
bigBed narrowPeak
20
tsv
6
bed bedMethyl
6
bigBed bedMethyl
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bedpe bed3+
2
hic
1
csv
Organism
94
Homo sapiens
Biosample type
57
tissue
31
cell line
5
in vitro differentiated cells
1
primary cell
Organ
62
pancreas
liver
16
epithelium
15
blood
15
bodily fluid
9
spleen
adipose tissue
2
brain
2
connective tissue
Project
94
AMP
Genome assembly (visualization)
82
GRCh38
79
hg19
Lab
94
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
organ_slims!
adipose tissue
liver
BIOSAMPLE
ASSAY
94 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
DNase-seq
Hi-C
FAIRE-seq
single cell RNA-seq
tissue
islet of Langerhans
19
19
1
spleen
6
2
1
body of pancreas
2
2
pancreas
2
1
brain
2
cell line
EndoC_BH1
13
1
1
1
GM12878
15
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic cell
1
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