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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ATAC-seq
total RNA-seq
13
ChIP-seq
10
MeRIP-seq
2
Hi-C
1
DNase-seq
Assay category
28
DNA accessibility
13
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
7
control
6
broad histone mark
5
nucleotide modification
4
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
41
bam
39
bed narrowPeak
12
bigWig
2
bedpe bed3+
2
hic
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
53
Homo sapiens
Biosample type
25
tissue
21
cell line
5
in vitro differentiated cells
2
primary cell
Organ
45
pancreas
21
epithelium
3
connective tissue
1
adipose tissue
Project
53
AMP
Genome assembly (visualization)
41
hg19
39
GRCh38
Lab
43
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
53 results
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Clear Filters
ATAC-seq
ChIP-seq
MeRIP-seq
Hi-C
DNase-seq
tissue
islet of Langerhans
19
4
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
13
6
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
osteoblast
1
1
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