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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
13
ATAC-seq
6
WGBS
4
MeRIP-seq
3
snDrop-seq
1
pCHi-C
Assay category
40
DNA accessibility
18
Transcription
6
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
250
August, 2021
196
February, 2023
180
May, 2022
151
February, 2021
139
August, 2017
97
October, 2019
80
May, 2020
80
May, 2021
56
September, 2020
47
September, 2023
40
March, 2020
29
October, 2018
26
November, 2019
25
February, 2020
25
November, 2017
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
9
October, 2017
8
February, 2018
8
June, 2019
6
September, 2017
5
December, 2019
5
March, 2019
5
November, 2020
4
December, 2018
4
July, 2018
4
November, 2018
3
March, 2023
3
October, 2022
1
August, 2018
1
August, 2022
1
January, 2019
1
September, 2018
Available data
485
tsv
483
bam
bigWig
89
txt
45
fastq
11
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3+
1
bed bed3
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
156
Homo sapiens
Biosample type
105
tissue
47
primary cell
cell line
4
in vitro differentiated cells
Organ
92
bone element
10
pancreas
8
kidney
8
skeleton
6
connective tissue
6
epithelium
6
limb
1
liver
Project
111
AMP
45
HPAP
Genome assembly (visualization)
14
hg19
9
GRCh38
Lab
107
AMP-T2D consortium
45
Klaus Kaestner, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
84
inconsistent ontology term
32
audit script error
biosample_type!
cell line
files.file_type!
bigWig
BIOSAMPLE
ASSAY
156 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
MeRIP-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
islet of Langerhans
4
distal epiphysis
1
distal epiphysis of femur
1
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primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
in vitro differentiated cells
adipocyte
4
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