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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
94
DNA binding
4
Transcription
2
DNA accessibility
Target of assay
42
transcription factor
31
histone
31
histone modification
21
control
16
narrow histone mark
15
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
477
February, 2021
283
May, 2020
282
August, 2017
272
May, 2021
221
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
82
July, 2019
79
April, 2019
78
November, 2017
76
October, 2018
72
September, 2018
49
April, 2018
44
November, 2019
41
August, 2021
39
February, 2018
26
November, 2018
24
May, 2022
15
October, 2017
11
March, 2020
11
September, 2017
7
December, 2018
7
January, 2019
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
100
bam
94
fastq
77
bigWig
74
bed narrowPeak
51
bigBed narrowPeak
16
bed bed3+
4
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
100
Homo sapiens
Biosample type
48
tissue
43
in vitro differentiated cells
6
primary cell
3
stem cell
Organ
63
liver
19
epithelium
13
embryo
6
connective tissue
Project
100
AMP
Genome assembly (visualization)
83
GRCh38
83
hg19
Lab
100
AMP-T2D consortium
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
biosample_type!
cell line
BIOSAMPLE
ASSAY
100 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
tissue
liver
38
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
primary cell
osteoblast
4
1
1
stem cell
hESC
3
See all biosamples
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