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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
471
total RNA-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
14
ATAC-seq
6
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
1
pCHi-C
Assay category
489
Transcription
42
DNA accessibility
6
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
485
tsv
483
bam
473
bigWig
89
txt
45
fastq
11
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3+
1
bed bed3
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
629
Homo sapiens
Biosample type
549
tissue
cell line
54
primary cell
26
in vitro differentiated cells
Organ
461
connective tissue
386
adipose tissue
150
bone element
10
pancreas
8
kidney
8
skeleton
6
epithelium
6
limb
1
liver
Project
584
AMP
45
HPAP
Genome assembly (visualization)
487
hg19
482
GRCh38
Lab
580
AMP-T2D consortium
45
Klaus Kaestner, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
102
inconsistent ontology term
32
audit script error
biosample_type!
cell line
month_released!
September, 2017
BIOSAMPLE
ASSAY
629 results
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total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
islet of Langerhans
4
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primary cell
Langerhans cell
27
12
osteoblast
5
2
1
1
pancreatic alpha cell
6
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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