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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
10
MeRIP-seq
6
total RNA-seq
1
ATAC-seq
Assay category
74
DNA binding
6
Transcription
1
DNA accessibility
Target of assay
34
control
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
5
nucleotide modification
Date released
713
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
82
bam
60
fastq
52
bigWig
47
bed narrowPeak
46
bigBed narrowPeak
6
tsv
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
91
Homo sapiens
Biosample type
78
tissue
7
primary cell
6
cell line
Organ
63
pancreas
28
connective tissue
23
adipose tissue
8
epithelium
Project
91
AMP
Genome assembly (visualization)
52
GRCh38
52
hg19
Lab
81
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
1
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
91 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
tissue
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
islet of Langerhans
4
+ See 1 more…
primary cell
osteoblast
4
1
pancreatic acinar cell
2
cell line
EndoC_BH1
6
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