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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
Hi-C
10
MeRIP-seq
3
ATAC-seq
3
ChIP-seq
2
pCHi-C
2
total RNA-seq
1
DNase-seq
Assay category
10
3D chromatin structure
4
DNA accessibility
3
DNA binding
2
Transcription
Target of assay
5
control
5
nucleotide modification
3
histone
3
histone modification
3
narrow histone mark
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
tsv
25
bigWig
22
bam
12
bedpe bed3+
10
hic
5
bed narrowPeak
2
ibed
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
31
Homo sapiens
Biosample type
16
tissue
8
cell line
4
in vitro differentiated cells
3
primary cell
Organ
18
pancreas
9
epithelium
2
blood vessel
2
connective tissue
2
heart
2
musculature of body
2
vasculature
1
liver
1
vein
Project
26
AMP
5
T1D
Genome assembly (visualization)
19
hg19
5
GRCh38
Lab
21
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
12
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
31 results
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Clear Filters
Hi-C
MeRIP-seq
ATAC-seq
ChIP-seq
pCHi-C
total RNA-seq
DNase-seq
tissue
islet of Langerhans
4
1
2
2
psoas muscle
2
aorta
1
heart left ventricle
1
heart right ventricle
1
+ See 2 more…
cell line
EndoC_BH1
6
1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
lymphocyte of B lineage (iPSC)
1
1
primary cell
osteoblast
1
1
endothelial cell of umbilical vein
1
See all biosamples
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