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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
10
DNase-seq
10
MeRIP-seq
7
WGBS
1
ATAC-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
70
DNA binding
12
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
11
control
7
chromatin remodeller
5
nucleotide modification
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
93
bam
88
fastq
85
bigWig
75
bed narrowPeak
74
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
tsv
1
csv
Organism
100
Homo sapiens
Biosample type
67
cell line
30
tissue
3
primary cell
Organ
53
liver
17
pancreas
15
blood
15
bodily fluid
9
spleen
6
epithelium
3
connective tissue
2
brain
1
adipose tissue
Project
100
AMP
Genome assembly (visualization)
81
GRCh38
73
hg19
Lab
90
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
tsv
BIOSAMPLE
ASSAY
100 results
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Clear Filters
ChIP-seq
DNase-seq
MeRIP-seq
WGBS
ATAC-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
EndoC_BH1
6
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
islet of Langerhans
4
pancreas
2
1
+ See 3 more…
primary cell
osteoblast
1
1
pancreatic cell
1
See all biosamples
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