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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
48
total RNA-seq
19
WGBS
18
small RNA-seq
15
RRBS
10
DNase-seq
10
MeRIP-seq
8
Hi-C
7
ATAC-seq
4
single cell RNA-seq
3
FAIRE-seq
Assay category
70
DNA binding
70
Transcription
34
DNA methylation
20
DNA accessibility
8
3D chromatin structure
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
14
control
7
chromatin remodeller
5
nucleotide modification
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
175
bam
170
bigWig
88
fastq
82
bed narrowPeak
76
bigBed narrowPeak
69
tsv
30
bed bedMethyl
30
bigBed bedMethyl
14
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
4
hdf5
1
csv
Organism
212
Homo sapiens
Biosample type
107
tissue
67
cell line
38
primary cell
Organ
63
liver
25
connective tissue
25
heart
23
pancreas
20
brain
19
epithelium
15
blood
15
bodily fluid
13
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
musculature of body
9
spleen
5
limb
3
artery
2
pericardium
1
eye
Project
212
AMP
Genome assembly (visualization)
168
hg19
164
GRCh38
Lab
202
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
December, 2019
BIOSAMPLE
ASSAY
212 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
small RNA-seq
RRBS
DNase-seq
MeRIP-seq
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
liver
4
2
1
2
spleen
6
2
1
body of pancreas
2
2
2
2
omental fat pad
4
1
1
+ See 27 more…
cell line
HepG2
45
1
GM12878
15
EndoC_BH1
6
primary cell
osteoblast
4
1
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
+ See 22 more…
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