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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
400
DNA binding
4
Transcription
2
DNA accessibility
Target of assay
242
transcription factor
86
histone
86
histone modification
74
control
66
recombinant protein
50
broad histone mark
36
narrow histone mark
35
RNA binding protein
15
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
649
February, 2021
411
August, 2017
400
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
May, 2022
170
February, 2023
168
July, 2018
96
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
392
bam
333
bigWig
318
fastq
311
bed narrowPeak
309
bigBed narrowPeak
78
tagAlign
67
bed broadPeak
61
bigBed broadPeak
4
tsv
3
tar
1
bed bed3+
Organism
416
Homo sapiens
Biosample type
321
cell line
86
tissue
9
primary cell
Organ
315
liver
91
brain
12
epithelium
10
pancreas
6
connective tissue
vasculature
3
blood vessel
Project
416
AMP
Genome assembly (visualization)
282
GRCh38
281
hg19
Lab
406
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
May, 2022
organ_slims!
vasculature
BIOSAMPLE
ASSAY
416 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
HepG2
315
EndoC_BH1
6
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 2 more…
primary cell
osteoblast
4
1
1
astrocyte of the cerebellum
3
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