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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
30
total RNA-seq
15
ATAC-seq
10
MeRIP-seq
1
DNase-seq
1
single cell RNA-seq
Assay category
112
DNA binding
31
Transcription
16
DNA accessibility
Target of assay
92
histone
92
histone modification
54
broad histone mark
38
narrow histone mark
19
control
6
transcription factor
5
nucleotide modification
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
157
bam
142
bigWig
113
bed narrowPeak
79
bigBed narrowPeak
73
fastq
30
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
csv
Organism
169
Homo sapiens
Biosample type
84
tissue
79
primary cell
6
cell line
Organ
82
pancreas
67
epithelium
57
heart
23
kidney
6
connective tissue
Project
169
AMP
Genome assembly (visualization)
143
hg19
142
GRCh38
Lab
159
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
169 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
DNase-seq
single cell RNA-seq
tissue
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
islet of Langerhans
4
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 2 more…
cell line
EndoC_BH1
6
See all biosamples
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