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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
ChIP-seq
93
total RNA-seq
5
ATAC-seq
5
DNase-seq
4
RRBS
1
FAIRE-seq
Assay category
159
DNA binding
93
Transcription
11
DNA accessibility
4
DNA methylation
Target of assay
121
histone modification
120
histone
61
broad histone mark
58
narrow histone mark
35
transcription factor
8
RNA binding protein
3
chromatin remodeller
3
control
Date released
316
May, 2021
281
November, 2017
261
August, 2017
260
May, 2020
216
October, 2019
188
February, 2021
186
June, 2019
164
July, 2018
97
May, 2019
79
July, 2019
77
December, 2017
72
September, 2018
70
November, 2018
65
April, 2019
60
August, 2021
58
November, 2019
49
April, 2018
44
February, 2023
42
October, 2018
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
12
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
March, 2019
3
October, 2022
2
January, 2018
Available data
260
bigWig
244
bam
241
fastq
141
bed narrowPeak
93
tsv
41
bed broadPeak
41
bigBed narrowPeak
37
tagAlign
30
bed bed3+
16
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
261
Homo sapiens
Biosample type
165
tissue
53
primary cell
49
in vitro differentiated cells
Organ
159
pancreas
70
connective tissue
20
liver
17
epithelium
adipose tissue
15
musculature of body
Project
267
AMP
Genome assembly (visualization)
267
hg19
239
GRCh38
Lab
267
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
267 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
18
1
skeletal muscle tissue
13
2
pancreas
12
right lobe of liver
1
primary cell
skeletal muscle myoblast
15
2
1
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
osteoblast
4
1
1
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in vitro differentiated cells
adipocyte
48
1
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