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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
10
MeRIP-seq
7
WGBS
6
RRBS
1
ATAC-seq
1
DNase-seq
Assay category
125
DNA binding
13
DNA methylation
2
DNA accessibility
Target of assay
76
histone
76
histone modification
54
control
48
broad histone mark
28
narrow histone mark
5
nucleotide modification
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
288
bam
287
fastq
bigWig
144
bed narrowPeak
93
tsv
85
tagAlign
43
bigBed narrowPeak
42
bed broadPeak
34
bed bed3+
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
149
Homo sapiens
Biosample type
110
tissue
20
in vitro differentiated cells
14
primary cell
6
cell line
Organ
61
connective tissue
40
adipose tissue
39
pancreas
36
liver
18
epithelium
13
musculature of body
Project
150
AMP
Genome assembly (visualization)
7
hg19
3
GRCh38
Lab
140
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
150 results
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ChIP-seq
MeRIP-seq
WGBS
RRBS
ATAC-seq
DNase-seq
tissue
subcutaneous abdominal adipose tissue
35
3
liver
31
3
1
islet of Langerhans
15
4
skeletal muscle tissue
9
4
adipose tissue
1
1
+ See 2 more…
in vitro differentiated cells
adipocyte
20
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
osteoblast
1
skeletal muscle myoblast
1
cell line
EndoC_BH1
6
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