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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
6
MeRIP-seq
4
ATAC-seq
4
DNase-seq
4
total RNA-seq
1
RRBS
Assay category
94
DNA binding
8
DNA accessibility
4
Transcription
1
DNA methylation
Target of assay
52
histone
52
histone modification
29
narrow histone mark
24
transcription factor
22
broad histone mark
21
control
6
RNA binding protein
3
chromatin remodeller
3
nucleotide modification
Date released
312
November, 2017
269
May, 2021
162
February, 2021
148
May, 2020
134
May, 2022
110
February, 2023
101
August, 2017
73
September, 2018
72
October, 2019
66
August, 2021
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
118
bam
112
fastq
99
bigWig
78
bed narrowPeak
tagAlign
21
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
8
bed bed3+
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
113
Homo sapiens
Biosample type
tissue
54
in vitro differentiated cells
53
primary cell
6
cell line
Organ
60
connective tissue
47
pancreas
35
epithelium
Project
113
AMP
Genome assembly (visualization)
90
hg19
86
GRCh38
Lab
107
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tagAlign
biosample_type!
tissue
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
MeRIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RRBS
in vitro differentiated cells
adipocyte
53
1
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
osteoblast
1
1
4
skeletal muscle myoblast
3
2
1
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cell line
EndoC_BH1
6
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