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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
19
total RNA-seq
10
MeRIP-seq
1
ATAC-seq
Assay category
24
DNA binding
19
Transcription
1
DNA accessibility
Target of assay
16
histone
16
histone modification
13
control
8
broad histone mark
8
narrow histone mark
5
nucleotide modification
Date released
713
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
45
bam
39
fastq
36
bigWig
19
tsv
18
bed narrowPeak
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
54
Homo sapiens
Biosample type
39
in vitro differentiated cells
6
cell line
5
primary cell
4
tissue
Organ
13
embryo
10
pancreas
6
epithelium
5
connective tissue
Project
54
AMP
Genome assembly (visualization)
36
GRCh38
36
hg19
Lab
44
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
2
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
54 results
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Clear Filters
ChIP-seq
total RNA-seq
MeRIP-seq
ATAC-seq
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 2 more…
cell line
EndoC_BH1
6
primary cell
osteoblast
4
1
tissue
islet of Langerhans
4
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