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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
19
total RNA-seq
10
MeRIP-seq
5
ATAC-seq
1
Hi-C
Assay category
24
DNA binding
19
Transcription
5
DNA accessibility
1
3D chromatin structure
Target of assay
16
histone
16
histone modification
13
control
8
broad histone mark
8
narrow histone mark
5
nucleotide modification
Date released
713
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
46
bam
40
fastq
36
bigWig
19
tsv
18
bed narrowPeak
2
bed broadPeak
bed bed3+
1
bedpe
1
bigBed broadPeak
1
bigBed narrowPeak
1
hic
Organism
59
Homo sapiens
Biosample type
39
in vitro differentiated cells
9
tissue
6
cell line
5
primary cell
Organ
15
pancreas
13
embryo
6
epithelium
5
connective tissue
Project
59
AMP
Genome assembly (visualization)
39
hg19
38
GRCh38
Lab
44
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
2
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
59 results
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Clear Filters
ChIP-seq
total RNA-seq
MeRIP-seq
ATAC-seq
Hi-C
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 2 more…
tissue
islet of Langerhans
4
4
1
cell line
EndoC_BH1
6
primary cell
osteoblast
4
1
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