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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
27
snATAC-seq
15
ATAC-seq
12
single cell RNA-seq
8
ChIP-seq
6
MeRIP-seq
6
WGBS
2
pCHi-C
1
DNase-seq
Assay category
117
Transcription
43
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
6
control
5
transcription factor
3
nucleotide modification
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
126
bam
112
bigWig
111
tsv
45
fastq
17
bed narrowPeak
8
tagAlign
4
bed bedgraph
3
bed bed3+
2
bed bed3
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
182
Homo sapiens
Biosample type
tissue
102
cell line
54
primary cell
26
in vitro differentiated cells
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
38
epithelium
38
pancreas
17
connective tissue
2
liver
Project
137
AMP
45
HPAP
Genome assembly (visualization)
128
hg19
122
GRCh38
Lab
131
AMP-T2D consortium
45
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
50
inconsistent ontology term
27
audit script error
1
inconsistent replicate
biosample_type!
tissue
BIOSAMPLE
ASSAY
182 results
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total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
MeRIP-seq
WGBS
pCHi-C
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
6
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
osteoblast
5
2
1
1
pancreatic alpha cell
6
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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