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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
single cell RNA-seq
32
pCHi-C
25
total RNA-seq
10
Hi-C
10
MeRIP-seq
5
ATAC-seq
3
ChIP-seq
1
DNase-seq
Assay category
68
Transcription
10
3D chromatin structure
6
DNA accessibility
3
DNA binding
Target of assay
5
control
5
nucleotide modification
3
histone
3
histone modification
3
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
98
tsv
74
bigWig
71
bam
44
fastq
12
bedpe bed3+
10
hic
5
bed narrowPeak
2
ibed
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
129
Homo sapiens
Biosample type
50
primary cell
50
tissue
17
cell line
8
in vitro differentiated cells
4
stem cell
Organ
63
pancreas
45
epithelium
10
connective tissue
7
heart
5
musculature of body
4
blood vessel
4
vasculature
3
liver
2
brain
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
122
AMP
7
T1D
Genome assembly (visualization)
87
hg19
71
GRCh38
Lab
119
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
23
inconsistent ontology term
BIOSAMPLE
ASSAY
129 results
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Clear Filters
single cell RNA-seq
pCHi-C
total RNA-seq
Hi-C
MeRIP-seq
ATAC-seq
ChIP-seq
DNase-seq
primary cell
pancreatic delta cell
7
osteoblast
4
1
1
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
+ See 7 more…
tissue
islet of Langerhans
8
4
2
2
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
cell line
EndoC_BH1
2
6
2
1
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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