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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
total RNA-seq
105
ATAC-seq
53
ChIP-seq
33
pCHi-C
10
Hi-C
10
MeRIP-seq
1
DNase-seq
Assay category
209
Transcription
106
DNA accessibility
53
DNA binding
10
3D chromatin structure
Target of assay
30
histone
30
histone modification
30
narrow histone mark
28
control
5
nucleotide modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
305
bam
285
bigWig
238
tsv
50
tagAlign
32
bed narrowPeak
12
bedpe bed3+
10
hic
2
ibed
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
421
Homo sapiens
Biosample type
237
tissue
154
primary cell
18
cell line
8
in vitro differentiated cells
4
stem cell
Organ
197
liver
24
pancreas
12
epithelium
8
connective tissue
7
heart
5
musculature of body
4
blood vessel
4
vasculature
2
brain
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
369
AMP
52
T1D
Genome assembly (visualization)
298
hg19
229
GRCh38
Lab
366
AMP-T2D consortium
45
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
31
inconsistent ontology term
BIOSAMPLE
ASSAY
421 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
Hi-C
MeRIP-seq
DNase-seq
tissue
liver
144
50
1
1
islet of Langerhans
2
2
2
4
psoas muscle
2
1
2
aorta
1
1
1
heart left ventricle
1
1
1
+ See 16 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
osteoblast
4
1
1
B cell
2
2
+ See 26 more…
cell line
EndoC_BH1
2
2
1
6
early embryonic cell
2
HepG2
1
MCF-7
1
RCC 7860 VHL
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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