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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
41
WGBS
34
single cell RNA-seq
30
total RNA-seq
22
snATAC-seq
10
MeRIP-seq
1
DNase-seq
Assay category
64
Transcription
41
DNA methylation
23
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
95
zippedFastqFolder
11
bam
7
txt
6
fastq
5
bigWig
4
tsv
2
bed bed3+
1
bed broadPeak
1
bed narrowPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
138
Homo sapiens
Biosample type
100
primary cell
32
tissue
6
cell line
Organ
57
pancreas
47
epithelium
20
liver
5
connective tissue
2
musculature of body
Project
95
HPAP
43
AMP
Genome assembly (visualization)
6
hg19
5
GRCh38
Lab
95
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
7
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
1
audit script error
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
138 results
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Clear Filters
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
MeRIP-seq
DNase-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
pancreatic beta cell
16
osteoblast
4
1
tissue
liver
20
islet of Langerhans
6
4
skeletal muscle tissue
1
1
cell line
EndoC_BH1
6
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