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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
406
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
ATAC-seq
1
DNase-seq
Assay category
406
DNA binding
4
Transcription
1
DNA accessibility
Target of assay
244
transcription factor
88
histone
88
histone modification
76
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
397
bam
339
bigWig
324
fastq
314
bed narrowPeak
313
bigBed narrowPeak
78
tagAlign
71
bed broadPeak
65
bigBed broadPeak
4
tsv
3
tar
1
bed bed3+
Organism
421
Homo sapiens
Biosample type
321
cell line
86
tissue
14
primary cell
Organ
315
liver
91
brain
12
epithelium
10
pancreas
6
vasculature
5
connective tissue
3
blood vessel
Project
421
AMP
Genome assembly (visualization)
286
hg19
285
GRCh38
Lab
411
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
421 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
DNase-seq
cell line
HepG2
315
EndoC_BH1
6
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 2 more…
primary cell
osteoblast
4
1
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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