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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ATAC-seq
24
total RNA-seq
12
ChIP-seq
10
MeRIP-seq
2
Hi-C
1
DNase-seq
Assay category
28
DNA accessibility
24
Transcription
12
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
7
control
6
broad histone mark
5
nucleotide modification
4
narrow histone mark
RNA binding protein
1
transcription factor
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
64
bam
38
bed narrowPeak
35
bigWig
24
tsv
2
bedpe bed3+
2
hic
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
76
Homo sapiens
Biosample type
44
tissue
21
cell line
6
primary cell
5
in vitro differentiated cells
Organ
64
pancreas
21
epithelium
7
connective tissue
1
adipose tissue
Project
76
AMP
Genome assembly (visualization)
64
hg19
62
GRCh38
Lab
66
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent ontology term
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
76 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
MeRIP-seq
Hi-C
DNase-seq
tissue
islet of Langerhans
19
19
4
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
12
6
1
primary cell
osteoblast
1
4
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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