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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
10
MeRIP-seq
6
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
59
DNA binding
6
Transcription
2
DNA accessibility
Target of assay
34
control
30
histone
30
histone modification
19
broad histone mark
transcription factor
11
RNA binding protein
11
narrow histone mark
5
nucleotide modification
Date released
710
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
308
August, 2021
307
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
67
bam
45
fastq
37
bigWig
32
bed narrowPeak
31
bigBed narrowPeak
6
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
77
Homo sapiens
Biosample type
63
tissue
8
primary cell
6
cell line
Organ
53
pancreas
24
connective tissue
18
adipose tissue
8
epithelium
Project
77
AMP
Genome assembly (visualization)
38
GRCh38
38
hg19
Lab
67
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
1
inconsistent control read length
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
77 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
tissue
body of pancreas
24
endocrine pancreas
16
subcutaneous adipose tissue
10
omental fat pad
8
islet of Langerhans
4
+ See 1 more…
primary cell
osteoblast
4
1
1
pancreatic acinar cell
2
cell line
EndoC_BH1
6
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