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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
10
DNase-seq
10
MeRIP-seq
7
WGBS
4
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
70
DNA binding
12
DNA accessibility
7
DNA methylation
5
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
11
control
7
chromatin remodeller
5
nucleotide modification
3
other context
3
other post-translational modification
Date released
715
February, 2021
406
November, 2017
404
August, 2017
399
May, 2021
341
May, 2020
318
August, 2021
314
October, 2019
218
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
18
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2023
Available data
93
bam
88
fastq
85
bigWig
75
bed narrowPeak
74
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
4
tsv
1
csv
Organism
104
Homo sapiens
Biosample type
67
cell line
30
tissue
7
primary cell
Organ
53
liver
17
pancreas
15
blood
15
bodily fluid
9
spleen
7
connective tissue
6
epithelium
2
brain
1
adipose tissue
Project
104
AMP
Genome assembly (visualization)
85
GRCh38
77
hg19
Lab
94
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
104 results
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Clear Filters
ChIP-seq
DNase-seq
MeRIP-seq
WGBS
total RNA-seq
ATAC-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
EndoC_BH1
6
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
islet of Langerhans
4
pancreas
2
1
+ See 3 more…
primary cell
osteoblast
1
4
1
pancreatic cell
1
See all biosamples
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