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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
250
ChIP-seq
89
total RNA-seq
9
WGBS
5
RRBS
2
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
250
DNA binding
89
Transcription
14
DNA methylation
5
DNA accessibility
Target of assay
154
histone modification
153
histone
92
broad histone mark
61
narrow histone mark
58
control
38
transcription factor
13
RNA binding protein
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
244
bam
233
fastq
223
bigWig
111
bed narrowPeak
89
tsv
67
bigBed narrowPeak
59
tagAlign
26
bed bed3+
26
bed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
Organism
351
Homo sapiens
Biosample type
358
tissue
68
in vitro differentiated cells
61
primary cell
Organ
198
pancreas
80
adipose tissue
80
connective tissue
54
liver
26
musculature of body
Project
358
AMP
Genome assembly (visualization)
225
hg19
203
GRCh38
Lab
358
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2020
BIOSAMPLE
ASSAY
358 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
body of pancreas
33
skeletal muscle tissue
22
4
endocrine pancreas
16
pancreas
16
subcutaneous adipose tissue
12
1
white adipose tissue
12
omental fat pad
11
adipose tissue
2
3
right lobe of liver
1
1
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