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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
4
total RNA-seq
2
DNase-seq
Assay category
23
DNA binding
4
Transcription
2
DNA accessibility
3D chromatin structure
Target of assay
9
control
7
histone
7
histone modification
7
recombinant protein
7
transcription factor
4
broad histone mark
3
narrow histone mark
Date released
315
November, 2017
96
February, 2021
61
November, 2018
43
August, 2021
29
October, 2019
27
December, 2018
23
January, 2019
21
May, 2021
15
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
29
bam
19
bigWig
15
bed narrowPeak
8
bigBed narrowPeak
4
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
29
Homo sapiens
Biosample type
241
tissue
33
primary cell
29
cell line
6
in vitro differentiated cells
Organ
15
kidney
14
pancreas
2
epithelium
Project
29
AMP
Genome assembly (visualization)
19
GRCh38
19
hg19
Lab
29
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
total RNA-seq
DNase-seq
cell line
Panc1
13
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
1
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