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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
5
single cell RNA-seq
4
DNase-seq
2
ATAC-seq
2
total RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
24
DNA binding
7
DNA accessibility
7
Transcription
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
55
June, 2019
34
October, 2019
31
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
74
bam
66
bigWig
45
tsv
fastq
21
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
hic
1
tar
Organism
39
Homo sapiens
Biosample type
242
tissue
39
primary cell
30
cell line
8
in vitro differentiated cells
Organ
37
epithelium
21
blood vessel
21
vasculature
21
vein
11
kidney
5
pancreas
1
connective tissue
1
liver
Project
39
AMP
Genome assembly (visualization)
31
hg19
27
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
fastq
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
single cell RNA-seq
DNase-seq
ATAC-seq
total RNA-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
pancreatic acinar cell
3
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
pancreatic ductal cell
1
pancreatic stellate cell
1
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