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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
21
total RNA-seq
5
STARR-seq
2
Capture-C
2
DNase-seq
2
Hi-C
1
whole genome sequencing assay
Assay category
41
DNA binding
21
Transcription
2
3D chromatin structure
2
DNA accessibility
1
DNA sequencing
Target of assay
18
transcription factor
13
control
10
histone
10
histone modification
7
recombinant protein
5
broad histone mark
5
narrow histone mark
1
RNA binding protein
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
42
bigWig
37
bam
29
bed narrowPeak
21
tsv
8
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
vcf
Organism
74
Homo sapiens
Biosample type
471
tissue
74
cell line
50
in vitro differentiated cells
38
primary cell
Organ
31
liver
17
kidney
17
pancreas
8
embryo
4
epithelium
Project
74
AMP
Genome assembly (visualization)
43
hg19
28
GRCh38
Lab
40
AMP-T2D consortium
34
Bing Ren, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
74 results
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Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
Capture-C
DNase-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
Panc1
13
1
1
H1-hESC
8
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
EndoC_BH1
2
HEK293T
2
glomerular visceral epithelial cell
1
1
Synthesized DNA
1
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