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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
4
DNase-seq
2
ATAC-seq
2
total RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
28
DNA binding
7
DNA accessibility
2
Transcription
1
3D chromatin structure
Target of assay
24
histone
24
histone modification
13
broad histone mark
11
narrow histone mark
4
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
35
bam
26
bigWig
24
bed narrowPeak
13
bigBed narrowPeak
5
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
2
tsv
1
hic
1
tar
Organism
38
Homo sapiens
Biosample type
471
tissue
74
cell line
50
in vitro differentiated cells
38
primary cell
Organ
37
epithelium
21
blood vessel
21
vasculature
21
vein
11
kidney
5
liver
Project
38
AMP
Genome assembly (visualization)
29
hg19
25
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
38 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
hepatocyte
4
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
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