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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
9
DNase-seq
8
ATAC-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
78
DNA binding
18
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
61
transcription factor
21
RNA binding protein
15
recombinant protein
9
control
8
histone
8
histone modification
7
broad histone mark
5
chromatin remodeller
3
other context
3
other post-translational modification
1
narrow histone mark
Date released
715
February, 2021
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
98
fastq
96
bam
89
bigWig
80
bed narrowPeak
74
bigBed narrowPeak
11
bed broadPeak
10
tagAlign
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
104
Homo sapiens
Biosample type
58
cell line
45
tissue
1
primary cell
Organ
50
liver
15
blood
15
bodily fluid
14
brain
12
pancreas
10
spleen
2
adipose tissue
2
connective tissue
Project
104
AMP
Genome assembly (visualization)
88
GRCh38
79
hg19
Lab
103
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
May, 2021
BIOSAMPLE
ASSAY
104 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
42
1
GM12878
15
tissue
brain
11
2
spleen
6
1
1
2
body of pancreas
2
4
2
liver
4
2
pancreas
2
1
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primary cell
pancreatic cell
1
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