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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
268
ChIP-seq
89
total RNA-seq
13
ATAC-seq
9
WGBS
6
RRBS
5
DNase-seq
1
FAIRE-seq
Assay category
268
DNA binding
89
Transcription
19
DNA accessibility
15
DNA methylation
Target of assay
191
histone modification
190
histone
111
broad histone mark
78
narrow histone mark
53
control
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
261
fastq
255
bam
244
bigWig
150
bed narrowPeak
95
tagAlign
89
tsv
45
bigBed narrowPeak
43
bed broadPeak
19
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
384
Homo sapiens
Biosample type
281
tissue
63
in vitro differentiated cells
47
primary cell
Organ
171
pancreas
109
connective tissue
54
liver
46
adipose tissue
29
epithelium
26
musculature of body
12
brain
1
spleen
Project
391
AMP
Genome assembly (visualization)
247
hg19
221
GRCh38
Lab
390
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
391 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
32
89
1
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 8 more…
in vitro differentiated cells
adipocyte
62
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic acinar cell
1
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