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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
ChIP-seq
89
total RNA-seq
13
ATAC-seq
9
WGBS
5
DNase-seq
2
RRBS
1
FAIRE-seq
Assay category
246
DNA binding
89
Transcription
19
DNA accessibility
11
DNA methylation
Target of assay
172
histone modification
171
histone
99
broad histone mark
71
narrow histone mark
50
control
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
396
November, 2017
346
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
205
February, 2023
198
May, 2022
175
June, 2019
168
July, 2018
113
May, 2019
98
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
61
November, 2019
59
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
259
fastq
255
bam
231
bigWig
137
bed narrowPeak
89
tsv
80
tagAlign
45
bigBed narrowPeak
30
bed broadPeak
19
bed bed3+
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
358
Homo sapiens
Biosample type
255
tissue
63
in vitro differentiated cells
47
primary cell
Organ
171
pancreas
109
connective tissue
54
liver
46
adipose tissue
29
epithelium
musculature of body
12
brain
1
spleen
Project
365
AMP
Genome assembly (visualization)
232
hg19
221
GRCh38
Lab
364
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
365 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
32
89
1
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
pancreas
14
brain
11
+ See 7 more…
in vitro differentiated cells
adipocyte
62
1
primary cell
skeletal muscle myoblast
15
2
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic acinar cell
1
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