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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
8
ATAC-seq
2
total RNA-seq
1
Hi-C
Assay category
119
DNA binding
8
DNA accessibility
2
Transcription
1
3D chromatin structure
Target of assay
43
transcription factor
38
histone
38
histone modification
36
control
26
broad histone mark
13
RNA binding protein
12
narrow histone mark
2
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
122
bam
108
fastq
88
bigWig
84
bed narrowPeak
78
bigBed narrowPeak
10
tagAlign
2
bed broadPeak
2
tsv
Organism
130
Homo sapiens
Biosample type
100
tissue
28
cell line
2
primary cell
Organ
58
pancreas
27
blood
27
bodily fluid
24
adipose tissue
24
connective tissue
12
brain
8
spleen
2
epithelium
1
liver
Project
130
AMP
Genome assembly (visualization)
88
GRCh38
87
hg19
Lab
129
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
inconsistent control
Audit category:
missing controlled_by
Audit category:
1
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
130 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
body of pancreas
33
4
endocrine pancreas
16
omental fat pad
11
1
subcutaneous adipose tissue
12
brain
11
+ See 4 more…
cell line
GM12878
27
HepG2
1
primary cell
pancreatic acinar cell
2
See all biosamples
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